PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G05900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 272aa    MW: 30832.7 Da    PI: 8.7047
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G05900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.8e-3151101151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyeys+
  OMERI05G05900.1  51 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSN 101
                      79***********************************************95 PP

2K-box105.28e-351192155100
            K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s+ s ++e +a+++qqe+akLk++i nLq+++R l+G+++++++++eL+qLe +L+k+l kiR++Knell+++ie++q++e elq++n++L++k
  OMERI05G05900.1 119 SNASiVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSK 212
                      333469999************************************************************************************* PP

            K-box  98 lee 100
                      ++e
  OMERI05G05900.1 213 VAE 215
                      986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.42243103IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-3943102IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-324565IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-3345115IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004599IPR002100Transcription factor, MADS-box
CDDcd002652.81E-4445117No hitNo description
PfamPF003191.2E-265299IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-326580IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-3280101IPR002100Transcription factor, MADS-box
PfamPF014863.2E-26128213IPR002487Transcription factor, K-box
PROSITE profilePS5129714.732129219IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MHIYKEQEAE PSTGLMMPEP APAASPGSGG SGGSGSVGAE KIGSRGKIEI KRIENTTNRQ  60
VTFCKRRNGL LKKAYELSVL CDAEVALVVF SSRGRLYEYS NNSVKETIER YKKANSDTSN  120
ASIVAEINAQ HYQQEAAKLK QQITNLQNSN RTLVGDNITT MNHRELKQLE GRLDKGLGKI  180
RARKNELLCA EIEYMQRRET ELQNDNMYLK SKVAESERGL QTVNMMGSAS TSEYVQNMIH  240
YDPRNFLQFN IMQQPQYYPE QEDRKAFMSD ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J6e-2045130290Myocyte-specific enhancer factor 2A
3p57_I6e-2045130290Myocyte-specific enhancer factor 2A
3p57_D6e-2045130290Myocyte-specific enhancer factor 2A
3p57_C6e-2045130290Myocyte-specific enhancer factor 2A
3p57_B6e-2045130290Myocyte-specific enhancer factor 2A
3p57_A6e-2045130290Myocyte-specific enhancer factor 2A
3kov_J6e-2045130290Myocyte-specific enhancer factor 2A
3kov_I6e-2045130290Myocyte-specific enhancer factor 2A
3kov_B6e-2045130290Myocyte-specific enhancer factor 2A
3kov_A6e-2045130290Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2321570.0AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds.
GenBankFJ7509420.0FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638060.10.0PREDICTED: MADS-box transcription factor 58
SwissprotQ2V0P10.0MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLA0A0E0DN630.0A0A0E0DN63_9ORYZ; Uncharacterized protein
STRINGLOC_Os05g11414.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.18e-95MIKC_MADS family protein